Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXA1P49639 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXA1P49639 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXA1P49639 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
HOXA1P49639 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXA1P49639 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXA1P49639 LAGE3P1-201ENST00000425356 484 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC13.21□□□□□ -0.29
HOXA1P49639 FGFR3P6-201ENST00000457012 610 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXA1P49639 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 AC107918.2-201ENST00000530817 355 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.21□□□□□ -0.29
HOXA1P49639 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXA1P49639 MIR3652-201ENST00000579335 131 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 AC010654.1-201ENST00000615722 808 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 GGTLC5P-201ENST00000617623 998 ntBASIC13.21□□□□□ -0.29
HOXA1P49639 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HOXA1P49639 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HOXA1P49639 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HOXA1P49639 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXA1P49639 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
HOXA1P49639 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
HOXA1P49639 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
HOXA1P49639 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.21□□□□□ -0.3
HOXA1P49639 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
HOXA1P49639 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
HOXA1P49639 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXA1P49639 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.2□□□□□ -0.3
HOXA1P49639 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC129492.6-201ENST00000611383 1305 ntBASIC13.2□□□□□ -0.3
HOXA1P49639 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.2□□□□□ -0.3
HOXA1P49639 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms