Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
XRCC1P18887 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
XRCC1P18887 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.8■□□□□ 0.12
XRCC1P18887 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.8■□□□□ 0.12
XRCC1P18887 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
XRCC1P18887 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.8■□□□□ 0.12
XRCC1P18887 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.8■□□□□ 0.12
XRCC1P18887 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.8■□□□□ 0.12
XRCC1P18887 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.8■□□□□ 0.12
XRCC1P18887 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.8■□□□□ 0.12
XRCC1P18887 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.8■□□□□ 0.12
XRCC1P18887 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.8■□□□□ 0.12
XRCC1P18887 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.8■□□□□ 0.12
XRCC1P18887 MIR4321-201ENST00000592276 80 ntBASIC15.8■□□□□ 0.12
XRCC1P18887 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
XRCC1P18887 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.8■□□□□ 0.12
XRCC1P18887 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.8■□□□□ 0.12
XRCC1P18887 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
XRCC1P18887 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 AC136621.1-201ENST00000624017 2304 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 RPL37AP1-201ENST00000412502 279 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 TSSK5P-201ENST00000423978 907 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 AC004890.2-204ENST00000481968 304 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.79■□□□□ 0.12
XRCC1P18887 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 AL079307.3-201ENST00000556114 283 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.79■□□□□ 0.12
XRCC1P18887 MIR4745-201ENST00000577608 62 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 LINC02084-201ENST00000606069 1096 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 AL009178.2-201ENST00000597278 2719 ntBASIC15.79■□□□□ 0.12
XRCC1P18887 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
XRCC1P18887 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
XRCC1P18887 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
XRCC1P18887 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.79■□□□□ 0.12
XRCC1P18887 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
XRCC1P18887 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
XRCC1P18887 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.78■□□□□ 0.12
XRCC1P18887 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.78■□□□□ 0.12
XRCC1P18887 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
XRCC1P18887 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
XRCC1P18887 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
XRCC1P18887 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms