Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXD4P09016 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXD4P09016 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXD4P09016 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 TIMM17BP1-201ENST00000545713 516 ntBASIC14.38□□□□□ -0.11
HOXD4P09016 AC104794.3-201ENST00000566840 1248 ntBASIC14.38□□□□□ -0.11
HOXD4P09016 RRP7BP-205ENST00000566851 833 ntBASIC14.38□□□□□ -0.11
HOXD4P09016 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 SRD5A3P1-201ENST00000603021 949 ntBASIC14.38□□□□□ -0.11
HOXD4P09016 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HOXD4P09016 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
HOXD4P09016 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXD4P09016 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXD4P09016 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
HOXD4P09016 AP006294.1-201ENST00000415407 339 ntBASIC14.37□□□□□ -0.11
HOXD4P09016 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD4P09016 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 AC074044.1-201ENST00000609673 707 ntBASIC14.37□□□□□ -0.11
HOXD4P09016 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXD4P09016 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD4P09016 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD4P09016 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 SLC7A15P-201ENST00000424028 1363 ntBASIC14.36□□□□□ -0.11
HOXD4P09016 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 AL359258.3-201ENST00000622910 2331 ntBASIC14.36□□□□□ -0.11
HOXD4P09016 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXD4P09016 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HOXD4P09016 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HOXD4P09016 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXD4P09016 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD4P09016 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms