Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 LINC00554-201ENST00000564841 3011 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
ABCA1O95477 AL031731.1-201ENST00000642131 2094 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.29□□□□□ -0.28
ABCA1O95477 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 KRT8P44-201ENST00000441609 1350 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 AC020907.1-201ENST00000616460 1350 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC233724.13-201ENST00000598383 410 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC013467.2-201ENST00000605472 835 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC068418.2-201ENST00000577309 3703 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
ABCA1O95477 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 AC092933.1-201ENST00000393644 945 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 MIR1247-201ENST00000408206 136 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 AL139010.1-201ENST00000454878 894 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 BRWD1P1-201ENST00000401091 371 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
ABCA1O95477 FO681548.1-201ENST00000455617 1132 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 AC104596.2-201ENST00000512793 793 ntBASIC13.28□□□□□ -0.28
ABCA1O95477 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.28□□□□□ -0.28
ABCA1O95477 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
ABCA1O95477 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
ABCA1O95477 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
ABCA1O95477 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
ABCA1O95477 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms