Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH4O15457 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH4O15457 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH4O15457 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 AC132872.4-202ENST00000622924 2756 ntBASIC17.62■□□□□ 0.41
MSH4O15457 AC090616.6-203ENST00000579186 1945 ntBASIC17.62■□□□□ 0.41
MSH4O15457 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH4O15457 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH4O15457 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH4O15457 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH4O15457 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH4O15457 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH4O15457 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH4O15457 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.62■□□□□ 0.41
MSH4O15457 AC012645.4-201ENST00000610691 1061 ntBASIC17.62■□□□□ 0.41
MSH4O15457 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
MSH4O15457 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH4O15457 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH4O15457 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
MSH4O15457 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
MSH4O15457 COX5BP8-201ENST00000416911 349 ntBASIC17.61■□□□□ 0.41
MSH4O15457 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 NME2P1-201ENST00000426182 414 ntBASIC17.61■□□□□ 0.41
MSH4O15457 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.61■□□□□ 0.41
MSH4O15457 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.61■□□□□ 0.41
MSH4O15457 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.61■□□□□ 0.41
MSH4O15457 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
MSH4O15457 AL049840.4-201ENST00000602422 811 ntBASIC17.61■□□□□ 0.41
MSH4O15457 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 AL358472.5-202ENST00000641448 1267 ntBASIC17.61■□□□□ 0.41
MSH4O15457 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH4O15457 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH4O15457 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH4O15457 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH4O15457 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms