Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AC009053.2-201ENST00000563701 2365 ntBASIC16.55■□□□□ 0.24
SOX1O00570 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SOX1O00570 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 PCGF3-213ENST00000620529 1899 ntBASIC16.54■□□□□ 0.24
SOX1O00570 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX1O00570 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.54■□□□□ 0.24
SOX1O00570 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 RN7SKP214-201ENST00000364208 315 ntBASIC16.54■□□□□ 0.24
SOX1O00570 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 AL391280.1-201ENST00000506969 1062 ntBASIC16.54■□□□□ 0.24
SOX1O00570 SCARNA21-201ENST00000517026 139 ntBASIC16.54■□□□□ 0.24
SOX1O00570 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX1O00570 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.54■□□□□ 0.24
SOX1O00570 AC006158.1-201ENST00000610661 249 ntBASIC16.54■□□□□ 0.24
SOX1O00570 AC090164.2-201ENST00000611487 516 ntBASIC16.54■□□□□ 0.24
SOX1O00570 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SOX1O00570 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX1O00570 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX1O00570 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX1O00570 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
SOX1O00570 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX1O00570 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX1O00570 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 PUDPP3-201ENST00000445368 636 ntBASIC16.53■□□□□ 0.24
SOX1O00570 PHKG1P2-201ENST00000457537 863 ntBASIC16.53■□□□□ 0.24
SOX1O00570 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
SOX1O00570 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 MIR5196-201ENST00000578146 115 ntBASIC16.53■□□□□ 0.24
SOX1O00570 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.53■□□□□ 0.24
SOX1O00570 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 LINC00431-202ENST00000636375 159 ntBASIC16.53■□□□□ 0.24
SOX1O00570 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 AC018470.1-201ENST00000624790 3129 ntBASIC16.53■□□□□ 0.24
SOX1O00570 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX1O00570 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX1O00570 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 ABALON-201ENST00000629058 1903 ntBASIC16.53■□□□□ 0.24
SOX1O00570 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX1O00570 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SOX1O00570 CAP2P1-201ENST00000557743 1390 ntBASIC16.52■□□□□ 0.24
SOX1O00570 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.52■□□□□ 0.24
SOX1O00570 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX1O00570 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX1O00570 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX1O00570 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
SOX1O00570 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX1O00570 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX1O00570 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX1O00570 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX1O00570 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX1O00570 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
SOX1O00570 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms