Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 RPL8P2-201ENST00000430538 502 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC114812.1-204ENST00000449669 728 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC009779.1-201ENST00000551138 283 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 STUB1-204ENST00000564370 875 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC018695.7-201ENST00000624587 2492 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 IL9RP3-201ENST00000442856 1674 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 CHCHD2P2-201ENST00000503744 321 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AC073592.2-201ENST00000623062 780 ntBASIC11.97□□□□□ -0.49
COL6A5A8TX70 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
COL6A5A8TX70 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
COL6A5A8TX70 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 RCC2P8-201ENST00000502779 1035 ntBASIC11.96□□□□□ -0.49
COL6A5A8TX70 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 PMEL-214ENST00000550447 901 ntTSL 3 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 AC093752.3-201ENST00000567343 901 ntBASIC11.96□□□□□ -0.49
COL6A5A8TX70 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 HMGB1P24-201ENST00000611897 328 ntBASIC11.96□□□□□ -0.49
COL6A5A8TX70 LINC02012-201ENST00000608206 1725 ntBASIC11.96□□□□□ -0.49
COL6A5A8TX70 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
COL6A5A8TX70 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
COL6A5A8TX70 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
COL6A5A8TX70 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 HIST2H2BA-201ENST00000412169 381 ntBASIC11.96□□□□□ -0.5
COL6A5A8TX70 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
COL6A5A8TX70 PHBP15-201ENST00000574228 665 ntBASIC11.96□□□□□ -0.5
COL6A5A8TX70 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
COL6A5A8TX70 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC11.96□□□□□ -0.5
COL6A5A8TX70 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC11.96□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms