Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHISA3A0PJX4 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.79□□□□□ -0.2
SHISA3A0PJX4 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.79□□□□□ -0.2
SHISA3A0PJX4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHISA3A0PJX4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TSPY19P-201ENST00000418461 509 ntBASIC13.78□□□□□ -0.2
SHISA3A0PJX4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TSPY18P-201ENST00000441642 509 ntBASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 MIR1199-201ENST00000621445 119 ntBASIC13.78□□□□□ -0.2
SHISA3A0PJX4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 CICP11-201ENST00000434745 2827 ntBASIC13.78□□□□□ -0.2
SHISA3A0PJX4 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
SHISA3A0PJX4 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
SHISA3A0PJX4 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SHISA3A0PJX4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SHISA3A0PJX4 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
SHISA3A0PJX4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
SHISA3A0PJX4 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 KRT18P56-201ENST00000507275 550 ntBASIC13.77□□□□□ -0.21
SHISA3A0PJX4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHISA3A0PJX4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.76□□□□□ -0.21
SHISA3A0PJX4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHISA3A0PJX4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms