Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMCH1Q9UPQ0 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AC004461.1-201ENST00000412461 403 ntBASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 KRT18P32-201ENST00000424695 1287 ntBASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AGAP7P-201ENST00000582299 2062 ntBASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 AGAP14-201ENST00000624701 2060 ntBASIC18.61■□□□□ 0.57
LIMCH1Q9UPQ0 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AC148477.4-201ENST00000613430 1793 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 FO393414.2-201ENST00000405153 598 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 SPDYE17-201ENST00000412399 783 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AL627223.1-201ENST00000416693 442 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 GPS2P2-201ENST00000430745 888 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 HIST3H2BA-201ENST00000436555 524 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 MIR4469-201ENST00000583919 79 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMCH1Q9UPQ0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMCH1Q9UPQ0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMCH1Q9UPQ0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMCH1Q9UPQ0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms