Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AC007292.2-201ENST00000593524 1812 ntBASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
DEPDC4Q8N2C3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
DEPDC4Q8N2C3 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
DEPDC4Q8N2C3 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
DEPDC4Q8N2C3 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
DEPDC4Q8N2C3 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 YBX2P1-201ENST00000394192 760 ntBASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
DEPDC4Q8N2C3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 HCG4B-203ENST00000450128 991 ntBASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms