Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
H3F3AP84243 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 AC022144.1-201ENST00000602255 1580 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 MIR770-201ENST00000390219 98 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.14□□□□□ -0.15
H3F3AP84243 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.14□□□□□ -0.15
H3F3AP84243 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.14□□□□□ -0.15
H3F3AP84243 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.14□□□□□ -0.15
H3F3AP84243 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.14□□□□□ -0.15
H3F3AP84243 AC114501.2-201ENST00000439631 535 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 RPL13P2-201ENST00000440687 659 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.14□□□□□ -0.15
H3F3AP84243 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 AC044860.1-202ENST00000559481 777 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.14□□□□□ -0.15
H3F3AP84243 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.14□□□□□ -0.15
H3F3AP84243 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.14□□□□□ -0.15
H3F3AP84243 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
H3F3AP84243 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
H3F3AP84243 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.14□□□□□ -0.15
H3F3AP84243 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.13□□□□□ -0.15
H3F3AP84243 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 AP003680.1-201ENST00000598970 3660 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 HYMAI-201ENST00000635591 3347 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 MRPS18AP1-201ENST00000414458 589 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.13□□□□□ -0.15
H3F3AP84243 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.13□□□□□ -0.15
H3F3AP84243 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.13□□□□□ -0.15
H3F3AP84243 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.13□□□□□ -0.15
H3F3AP84243 AC093214.1-201ENST00000511688 1107 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.13□□□□□ -0.15
H3F3AP84243 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
H3F3AP84243 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 AL109936.8-201ENST00000641772 604 ntBASIC14.13□□□□□ -0.15
H3F3AP84243 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.13□□□□□ -0.15
H3F3AP84243 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms