Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 AC009090.5-201ENST00000624886 2285 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 TREML5P-201ENST00000421694 576 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC4P56524 AC097493.3-201ENST00000509725 367 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.53■□□□□ 0.24
HDAC4P56524 AL512361.1-201ENST00000554200 418 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.53■□□□□ 0.24
HDAC4P56524 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 AL158211.3-201ENST00000607385 239 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 AL033527.5-202ENST00000641632 1098 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 AC105250.1-201ENST00000509378 2057 ntBASIC16.53■□□□□ 0.24
HDAC4P56524 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.53■□□□□ 0.24
HDAC4P56524 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HDAC4P56524 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HDAC4P56524 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC4P56524 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.52■□□□□ 0.24
HDAC4P56524 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.52■□□□□ 0.24
HDAC4P56524 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.52■□□□□ 0.24
HDAC4P56524 AL645939.2-201ENST00000427340 991 ntBASIC16.52■□□□□ 0.24
HDAC4P56524 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 AC027369.6-201ENST00000525520 931 ntBASIC16.52■□□□□ 0.24
HDAC4P56524 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.52■□□□□ 0.24
HDAC4P56524 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.52■□□□□ 0.24
HDAC4P56524 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HDAC4P56524 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HDAC4P56524 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.52■□□□□ 0.24
HDAC4P56524 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.52■□□□□ 0.23
HDAC4P56524 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.52■□□□□ 0.23
HDAC4P56524 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.52■□□□□ 0.23
HDAC4P56524 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.52■□□□□ 0.23
HDAC4P56524 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 AC020658.6-201ENST00000623564 1870 ntBASIC16.52■□□□□ 0.23
HDAC4P56524 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
HDAC4P56524 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HDAC4P56524 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.52■□□□□ 0.23
HDAC4P56524 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HDAC4P56524 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HDAC4P56524 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.51■□□□□ 0.23
HDAC4P56524 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HDAC4P56524 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
HDAC4P56524 AC023824.1-201ENST00000562945 2975 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms