Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.1□□□□□ -0.31
SNCAP37840 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.1□□□□□ -0.31
SNCAP37840 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SNCAP37840 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
SNCAP37840 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SNCAP37840 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
SNCAP37840 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SNCAP37840 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SNCAP37840 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SNCAP37840 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 AC005252.3-201ENST00000623855 2258 ntBASIC13.09□□□□□ -0.31
SNCAP37840 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.09□□□□□ -0.31
SNCAP37840 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.09□□□□□ -0.31
SNCAP37840 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.09□□□□□ -0.31
SNCAP37840 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.09□□□□□ -0.31
SNCAP37840 AF238378.1-201ENST00000526806 358 ntBASIC13.09□□□□□ -0.31
SNCAP37840 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.09□□□□□ -0.31
SNCAP37840 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 AC021097.1-201ENST00000607902 574 ntBASIC13.09□□□□□ -0.31
SNCAP37840 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.09□□□□□ -0.31
SNCAP37840 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.09□□□□□ -0.31
SNCAP37840 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.09□□□□□ -0.31
SNCAP37840 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SNCAP37840 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SNCAP37840 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SNCAP37840 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
SNCAP37840 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SNCAP37840 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SNCAP37840 AC007686.3-201ENST00000619017 3487 ntBASIC13.08□□□□□ -0.31
SNCAP37840 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SNCAP37840 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.08□□□□□ -0.32
SNCAP37840 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.08□□□□□ -0.32
SNCAP37840 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
SNCAP37840 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
SNCAP37840 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.08□□□□□ -0.32
SNCAP37840 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.08□□□□□ -0.32
SNCAP37840 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SNCAP37840 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.08□□□□□ -0.32
SNCAP37840 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
SNCAP37840 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms