Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
COL4A5P29400 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 Z97180.1-201ENST00000445173 988 ntBASIC18.52■□□□□ 0.56
COL4A5P29400 FGFR3P1-201ENST00000449999 601 ntBASIC18.52■□□□□ 0.56
COL4A5P29400 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A5P29400 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COL4A5P29400 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A5P29400 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A5P29400 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A5P29400 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.52■□□□□ 0.55
COL4A5P29400 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
COL4A5P29400 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL4A5P29400 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A5P29400 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A5P29400 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A5P29400 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
COL4A5P29400 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 AL627389.1-201ENST00000413508 1182 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A5P29400 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL4A5P29400 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A5P29400 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A5P29400 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.51■□□□□ 0.55
COL4A5P29400 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 NPM1P43-201ENST00000558669 786 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 AC009955.4-201ENST00000597192 544 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 AL358472.3-201ENST00000608147 415 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 AC073352.2-201ENST00000609385 439 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 AC100757.4-201ENST00000626934 759 ntBASIC18.51■□□□□ 0.55
COL4A5P29400 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC18.51■□□□□ 0.55
COL4A5P29400 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.51■□□□□ 0.55
COL4A5P29400 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A5P29400 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A5P29400 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 AL645937.2-201ENST00000396808 931 ntBASIC18.5■□□□□ 0.55
COL4A5P29400 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 AC011742.3-201ENST00000439053 820 ntBASIC18.5■□□□□ 0.55
COL4A5P29400 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A5P29400 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 AC106794.1-201ENST00000506935 792 ntBASIC18.5■□□□□ 0.55
COL4A5P29400 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 MIR4750-201ENST00000584564 56 ntBASIC18.5■□□□□ 0.55
COL4A5P29400 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A5P29400 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A5P29400 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL4A5P29400 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL4A5P29400 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A5P29400 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A5P29400 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A5P29400 AL162426.1-201ENST00000624141 743 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms