Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.78■□□□□ 0.12
MSH3P20585 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.78■□□□□ 0.12
MSH3P20585 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
MSH3P20585 AL590560.3-201ENST00000623350 461 ntBASIC15.78■□□□□ 0.12
MSH3P20585 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 AL033527.5-202ENST00000641632 1098 ntBASIC15.78■□□□□ 0.12
MSH3P20585 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
MSH3P20585 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
MSH3P20585 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
MSH3P20585 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 AC087499.5-201ENST00000452760 1342 ntBASIC15.77■□□□□ 0.12
MSH3P20585 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
MSH3P20585 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.77■□□□□ 0.12
MSH3P20585 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.77■□□□□ 0.12
MSH3P20585 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 MIR770-201ENST00000390219 98 ntBASIC15.77■□□□□ 0.12
MSH3P20585 AZGP1P1-201ENST00000411909 902 ntBASIC15.77■□□□□ 0.12
MSH3P20585 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.77■□□□□ 0.12
MSH3P20585 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.77■□□□□ 0.12
MSH3P20585 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSH3P20585 AC005498.2-205ENST00000593218 784 ntBASIC15.77■□□□□ 0.12
MSH3P20585 AL390955.2-201ENST00000603032 514 ntBASIC15.77■□□□□ 0.12
MSH3P20585 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
MSH3P20585 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSH3P20585 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.77■□□□□ 0.11
MSH3P20585 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
MSH3P20585 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSH3P20585 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSH3P20585 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
MSH3P20585 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSH3P20585 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.76■□□□□ 0.11
MSH3P20585 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 AC104640.1-201ENST00000562617 2109 ntBASIC15.76■□□□□ 0.11
MSH3P20585 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.76■□□□□ 0.11
MSH3P20585 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.76■□□□□ 0.11
MSH3P20585 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.76■□□□□ 0.11
MSH3P20585 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.76■□□□□ 0.11
MSH3P20585 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms