Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SPTA1P02549 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SPTA1P02549 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
SPTA1P02549 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SPTA1P02549 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.27□□□□□ -0.13
SPTA1P02549 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.27□□□□□ -0.13
SPTA1P02549 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.27□□□□□ -0.13
SPTA1P02549 AC069218.1-201ENST00000435269 762 ntBASIC14.27□□□□□ -0.13
SPTA1P02549 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.27□□□□□ -0.13
SPTA1P02549 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.27□□□□□ -0.13
SPTA1P02549 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.27□□□□□ -0.13
SPTA1P02549 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
SPTA1P02549 AC018635.2-201ENST00000608625 364 ntBASIC14.27□□□□□ -0.13
SPTA1P02549 AC138649.2-201ENST00000615886 705 ntBASIC14.27□□□□□ -0.13
SPTA1P02549 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 AL691432.1-201ENST00000596308 1422 ntBASIC14.27□□□□□ -0.13
SPTA1P02549 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.27□□□□□ -0.13
SPTA1P02549 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.27□□□□□ -0.13
SPTA1P02549 LETM1P2-201ENST00000597330 2178 ntBASIC14.27□□□□□ -0.13
SPTA1P02549 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SPTA1P02549 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SPTA1P02549 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.27□□□□□ -0.13
SPTA1P02549 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SPTA1P02549 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SPTA1P02549 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SPTA1P02549 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SPTA1P02549 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
SPTA1P02549 AC245884.6-201ENST00000515672 1067 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SPTA1P02549 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.26□□□□□ -0.13
SPTA1P02549 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SPTA1P02549 MIR769-201ENST00000390225 118 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
SPTA1P02549 AC243562.2-201ENST00000561247 970 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.26□□□□□ -0.13
SPTA1P02549 FGFR3P5-201ENST00000564496 886 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.26□□□□□ -0.13
SPTA1P02549 AC005357.2-202ENST00000590507 1060 ntBASIC14.26□□□□□ -0.13
SPTA1P02549 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SPTA1P02549 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
SPTA1P02549 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
SPTA1P02549 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SPTA1P02549 BNIP3P1-202ENST00000550043 1585 ntBASIC14.25□□□□□ -0.13
SPTA1P02549 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
SPTA1P02549 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.25□□□□□ -0.13
SPTA1P02549 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SPTA1P02549 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.25□□□□□ -0.13
SPTA1P02549 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
SPTA1P02549 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SPTA1P02549 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SPTA1P02549 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SPTA1P02549 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms