Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KRT8P44-201ENST00000441609 1350 ntBASIC11.64□□□□□ -0.55
SMKR1H3BMG3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
SMKR1H3BMG3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AC134407.2-201ENST00000625089 1978 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AP000867.3-201ENST00000524675 377 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 EHF-205ENST00000527935 557 ntTSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AC099336.1-202ENST00000602961 463 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AL591684.3-201ENST00000605187 298 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AC148477.4-201ENST00000613430 1793 ntBASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC11.63□□□□□ -0.55
SMKR1H3BMG3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 ABR-205ENST00000544583 5595 ntTSL 2 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 MROH4P-201ENST00000431302 1578 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AC023024.2-201ENST00000623561 1993 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AP002383.4-201ENST00000442518 975 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AC104819.1-201ENST00000504587 486 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 PNN-202ENST00000553331 656 ntTSL 3 BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AC139887.3-201ENST00000568585 713 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC11.62□□□□□ -0.55
SMKR1H3BMG3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
SMKR1H3BMG3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms