Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 SNX18-202ENST00000343017 3140 ntBASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 LINC00528-201ENST00000600723 2160 ntBASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AC007686.3-201ENST00000619017 3487 ntBASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 KRT18P2-201ENST00000447938 1258 ntBASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 AC007292.2-201ENST00000593524 1812 ntBASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM49D1C9J1S8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 AC013726.1-201ENST00000563747 2285 ntBASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 AC023024.2-201ENST00000623561 1993 ntBASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM49D1C9J1S8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms