Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 AL390754.1-201ENST00000619088 582 ntBASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CUEDC1Q9NWM3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AC100757.3-201ENST00000622361 1406 ntBASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CRB3P1-201ENST00000449338 276 ntBASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AL512638.1-201ENST00000457493 794 ntBASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AL512361.1-201ENST00000554200 418 ntBASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 AL450472.2-201ENST00000603663 1156 ntBASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CUEDC1Q9NWM3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 MIR661-201ENST00000384842 89 ntBASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 PHKG1P2-201ENST00000457537 863 ntBASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 MEIS3P1-201ENST00000495167 958 ntBASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 AP005018.1-201ENST00000525475 301 ntBASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms