Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 AC133539.2-201ENST00000604757 467 ntBASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC60Q8IWA6 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AC026691.1-201ENST00000602502 2017 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AC134915.1-201ENST00000426461 574 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 HILS1-202ENST00000545329 423 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AC120045.2-201ENST00000567334 178 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AC008735.3-201ENST00000596646 500 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 CU634019.7-201ENST00000624153 1185 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 FP236241.2-201ENST00000624906 1185 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 PCDHA1-201ENST00000378133 2726 ntBASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC60Q8IWA6 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 KRT8P22-201ENST00000562317 1415 ntBASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 DOC2GP-204ENST00000639052 2548 ntBASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 AL162726.2-201ENST00000438986 1017 ntBASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC60Q8IWA6 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 ARSEP1-201ENST00000420443 635 ntBASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 AC112492.5-201ENST00000421897 457 ntBASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 RPL13AP25-201ENST00000484130 612 ntBASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CCDC60Q8IWA6 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms