Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 LINC02447-202ENST00000501888 2146 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 GPR53P-205ENST00000457298 1084 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 RN7SL752P-201ENST00000463779 287 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 WASH4P-201ENST00000564273 1246 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC132938.2-201ENST00000579188 680 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC026979.3-201ENST00000607315 403 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 AL591163.1-201ENST00000641757 987 ntBASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 GPAA1P2-202ENST00000606848 1787 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 SPDYE17-201ENST00000412399 783 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 IGHV3-71-201ENST00000523324 359 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 HILS1-202ENST00000545329 423 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 SLC7A15P-201ENST00000424028 1363 ntBASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC144BQ3MJ40 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 AL512384.1-201ENST00000406683 331 ntBASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC144BQ3MJ40 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms