Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
CKS1BP61024 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC11.21□□□□□ -0.62
CKS1BP61024 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC11.21□□□□□ -0.62
CKS1BP61024 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.62
CKS1BP61024 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.21□□□□□ -0.62
CKS1BP61024 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CKS1BP61024 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
CKS1BP61024 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC11.21□□□□□ -0.62
CKS1BP61024 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC11.21□□□□□ -0.62
CKS1BP61024 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC11.2□□□□□ -0.62
CKS1BP61024 PMPCAP1-201ENST00000508114 1576 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 HLA-DQB2-231ENST00000435145 2026 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 CCS-201ENST00000310190 942 ntTSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
CKS1BP61024 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
CKS1BP61024 THAP5-204ENST00000438865 868 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 NUS1P1-201ENST00000446295 882 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC11.2□□□□□ -0.62
CKS1BP61024 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC11.2□□□□□ -0.62
CKS1BP61024 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
CKS1BP61024 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 CICP11-201ENST00000434745 2827 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 HNRNPRP1-201ENST00000453465 1695 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 AC006277.1-201ENST00000624348 1610 ntBASIC11.2□□□□□ -0.62
CKS1BP61024 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CKS1BP61024 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CKS1BP61024 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CKS1BP61024 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
CKS1BP61024 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CKS1BP61024 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.19□□□□□ -0.62
CKS1BP61024 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
CKS1BP61024 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CKS1BP61024 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms