Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
FOXA1P55317 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
FOXA1P55317 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 ALG1L5P-201ENST00000482043 771 ntBASIC15.34■□□□□ 0.05
FOXA1P55317 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.34■□□□□ 0.05
FOXA1P55317 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.34■□□□□ 0.05
FOXA1P55317 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 KRT8P23-201ENST00000560090 1207 ntBASIC15.34■□□□□ 0.05
FOXA1P55317 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.34■□□□□ 0.05
FOXA1P55317 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 AC084121.4-201ENST00000641598 221 ntBASIC15.34■□□□□ 0.05
FOXA1P55317 AF228730.8-201ENST00000642140 221 ntBASIC15.34■□□□□ 0.05
FOXA1P55317 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA1P55317 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
FOXA1P55317 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA1P55317 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA1P55317 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA1P55317 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.33■□□□□ 0.05
FOXA1P55317 AC126365.1-201ENST00000578585 1514 ntBASIC15.33■□□□□ 0.05
FOXA1P55317 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.33■□□□□ 0.05
FOXA1P55317 AC023024.2-201ENST00000623561 1993 ntBASIC15.33■□□□□ 0.05
FOXA1P55317 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 AC026396.1-201ENST00000419388 421 ntBASIC15.33■□□□□ 0.04
FOXA1P55317 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 POLD2P1-201ENST00000511220 997 ntBASIC15.33■□□□□ 0.04
FOXA1P55317 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.33■□□□□ 0.04
FOXA1P55317 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA1P55317 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.33■□□□□ 0.04
FOXA1P55317 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA1P55317 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms