Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.98□□□□□ -0.17
LMX1BO60663 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.98□□□□□ -0.17
LMX1BO60663 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.98□□□□□ -0.17
LMX1BO60663 AL135744.1-201ENST00000565098 629 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 AL138918.1-201ENST00000568306 659 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 AC051619.7-201ENST00000568314 623 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.98□□□□□ -0.17
LMX1BO60663 AL365330.1-201ENST00000607459 531 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.98□□□□□ -0.17
LMX1BO60663 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.98□□□□□ -0.17
LMX1BO60663 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LMX1BO60663 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 AC138035.3-201ENST00000622706 2791 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
LMX1BO60663 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.98□□□□□ -0.17
LMX1BO60663 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMX1BO60663 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.97□□□□□ -0.17
LMX1BO60663 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 AC023157.3-201ENST00000619086 2088 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.97□□□□□ -0.17
LMX1BO60663 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 AC236430.1-201ENST00000402231 743 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.97□□□□□ -0.17
LMX1BO60663 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 AC125807.1-201ENST00000483097 614 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 AC243562.1-201ENST00000560672 389 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.97□□□□□ -0.17
LMX1BO60663 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.97□□□□□ -0.17
LMX1BO60663 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.97□□□□□ -0.17
LMX1BO60663 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.97□□□□□ -0.17
LMX1BO60663 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 AC006486.2-201ENST00000624246 2199 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 AC011477.6-201ENST00000604980 1927 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.97□□□□□ -0.17
LMX1BO60663 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 WASH6P-202ENST00000359512 1437 ntBASIC13.97□□□□□ -0.17
LMX1BO60663 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMX1BO60663 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LMX1BO60663 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms