Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
HMGB3O15347 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 AC087499.1-201ENST00000418141 1075 ntBASIC12.82□□□□□ -0.36
HMGB3O15347 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC12.82□□□□□ -0.36
HMGB3O15347 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 NDUFV2-AS1-203ENST00000608008 779 ntBASIC12.82□□□□□ -0.36
HMGB3O15347 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 AC005089.1-201ENST00000619486 2241 ntBASIC12.81□□□□□ -0.36
HMGB3O15347 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 TERF1P1-201ENST00000311003 1181 ntBASIC12.81□□□□□ -0.36
HMGB3O15347 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
HMGB3O15347 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.81□□□□□ -0.36
HMGB3O15347 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12.81□□□□□ -0.36
HMGB3O15347 AC011498.5-201ENST00000592027 486 ntBASIC12.81□□□□□ -0.36
HMGB3O15347 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.81□□□□□ -0.36
HMGB3O15347 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 AC005622.1-201ENST00000636801 1703 ntBASIC12.81□□□□□ -0.36
HMGB3O15347 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 GAB2-201ENST00000340149 6052 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 RNF213-201ENST00000319921 5316 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HMGB3O15347 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.81□□□□□ -0.36
HMGB3O15347 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HMGB3O15347 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HMGB3O15347 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HMGB3O15347 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.8□□□□□ -0.36
HMGB3O15347 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms