Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC140658.5-201ENST00000438532 169 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.55□□□□□ -0.24
SDCBPO00560 FDX1P1-201ENST00000449115 551 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.55□□□□□ -0.24
SDCBPO00560 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 RNA5SP416-201ENST00000516838 111 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC109635.5-201ENST00000533593 962 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.55□□□□□ -0.24
SDCBPO00560 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.55□□□□□ -0.24
SDCBPO00560 KRT19P2-202ENST00000557173 1012 ntBASIC13.55□□□□□ -0.24
SDCBPO00560 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
SDCBPO00560 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
SDCBPO00560 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.55□□□□□ -0.24
SDCBPO00560 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SDCBPO00560 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 FAM45BP-202ENST00000592932 1624 ntBASIC13.54□□□□□ -0.24
SDCBPO00560 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.54□□□□□ -0.24
SDCBPO00560 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SDCBPO00560 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.54□□□□□ -0.24
SDCBPO00560 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.54□□□□□ -0.24
SDCBPO00560 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.54□□□□□ -0.24
SDCBPO00560 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms