Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 AC013268.4-201ENST00000637413 2228 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 AL365209.1-201ENST00000624418 6473 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 AL109954.1-202ENST00000564051 2148 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
AP3B1O00203 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 AC092127.1-201ENST00000567093 3455 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.03■□□□□ 0.16
AP3B1O00203 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
AP3B1O00203 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
AP3B1O00203 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.03■□□□□ 0.16
AP3B1O00203 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.03■□□□□ 0.16
AP3B1O00203 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 MIR4469-201ENST00000583919 79 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 AC007967.4-201ENST00000614700 386 ntBASIC16.03■□□□□ 0.16
AP3B1O00203 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.03■□□□□ 0.16
AP3B1O00203 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
AP3B1O00203 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
AP3B1O00203 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.02■□□□□ 0.16
AP3B1O00203 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
AP3B1O00203 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
AP3B1O00203 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 AC006486.2-201ENST00000624246 2199 ntBASIC16.02■□□□□ 0.16
AP3B1O00203 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 AC126755.1-201ENST00000525846 6405 ntBASIC16.02■□□□□ 0.16
AP3B1O00203 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 AC004461.1-201ENST00000412461 403 ntBASIC16.02■□□□□ 0.16
AP3B1O00203 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.02■□□□□ 0.16
AP3B1O00203 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.02■□□□□ 0.16
AP3B1O00203 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 HNRNPUP1-201ENST00000554987 333 ntBASIC16.02■□□□□ 0.16
AP3B1O00203 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP3B1O00203 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.02■□□□□ 0.16
AP3B1O00203 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
AP3B1O00203 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.02■□□□□ 0.15
AP3B1O00203 PCDHA3-202ENST00000532566 4594 ntBASIC16.02■□□□□ 0.15
AP3B1O00203 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.02■□□□□ 0.15
AP3B1O00203 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.02■□□□□ 0.15
AP3B1O00203 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.15
AP3B1O00203 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
AP3B1O00203 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
AP3B1O00203 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP3B1O00203 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
AP3B1O00203 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.01■□□□□ 0.15
AP3B1O00203 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.01■□□□□ 0.15
AP3B1O00203 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP3B1O00203 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms