Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM49D1C9J1S8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 MRPL3P1-201ENST00000400109 1033 ntBASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 AC073389.1-201ENST00000595595 795 ntBASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 SPTSSB-204ENST00000617024 1292 ntBASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 FOXO1B-201ENST00000504678 1527 ntBASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 AC023908.3-201ENST00000564211 3047 ntBASIC15.92■□□□□ 0.14
TRIM49D1C9J1S8 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 FAAHP1-202ENST00000446499 1238 ntBASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 AP001005.1-201ENST00000571755 1248 ntBASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 AC068137.2-201ENST00000605408 478 ntBASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 AC064836.3-201ENST00000607928 673 ntBASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRIM49D1C9J1S8 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 AC148477.4-201ENST00000613430 1793 ntBASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.9■□□□□ 0.14
TRIM49D1C9J1S8 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms