Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC005237.2-201ENST00000434368 219 ntBASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC069335.1-201ENST00000489972 472 ntBASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC112482.1-201ENST00000492080 688 ntBASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 RNA5SP410-201ENST00000516285 106 ntBASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 AL161772.1-201ENST00000610494 4412 ntBASIC12.02□□□□□ -0.49
HLA-DRB4X5D2U9 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC069224.1-201ENST00000566372 1715 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC211486.1-202ENST00000416371 468 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC211476.1-201ENST00000503899 468 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SLC25A39P2-201ENST00000537614 270 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC061975.2-201ENST00000581722 295 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AC004835.2-201ENST00000603762 682 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 C8orf49-201ENST00000525043 1968 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 AP001282.1-201ENST00000531301 1499 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 LINC02447-202ENST00000501888 2146 ntBASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DRB4X5D2U9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms