Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 FAM86HP-204ENST00000513466 959 ntBASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 AP001258.2-201ENST00000529891 490 ntBASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 AC093813.1-201ENST00000605066 256 ntBASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDHGA1Q9Y5H4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ELK2AP-201ENST00000392510 1007 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AC136604.1-201ENST00000418535 575 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 PHKG1P2-201ENST00000457537 863 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ZNF767P-206ENST00000513792 565 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 GNRHR2-203ENST00000581100 1187 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AC106872.11-201ENST00000605838 421 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AL118558.3-201ENST00000607414 1079 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms