Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HHLA3Q9XRX5 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.68□□□□□ -0.54
HHLA3Q9XRX5 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HHLA3Q9XRX5 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC11.68□□□□□ -0.54
HHLA3Q9XRX5 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC002056.1-201ENST00000395613 760 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AL022342.1-201ENST00000400363 863 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC092474.2-201ENST00000424288 719 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 KRT18P58-201ENST00000527480 1120 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC109635.5-201ENST00000533593 962 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PDPK2P-202ENST00000562415 1191 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AL161645.1-201ENST00000622716 1255 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC232323.1-201ENST00000540724 2099 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 REXO1L5P-201ENST00000622260 2098 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 AC005912.2-201ENST00000619492 2400 ntBASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HHLA3Q9XRX5 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HHLA3Q9XRX5 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms