Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 AC007326.2-201ENST00000624224 7579 ntBASIC14.1□□□□□ -0.15
MMP28Q9H239 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 KRT8P49-201ENST00000604166 1432 ntBASIC14.1□□□□□ -0.15
MMP28Q9H239 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.1□□□□□ -0.15
MMP28Q9H239 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 ACTG1P4-201ENST00000425123 1122 ntBASIC14.1□□□□□ -0.15
MMP28Q9H239 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.1□□□□□ -0.15
MMP28Q9H239 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.1□□□□□ -0.15
MMP28Q9H239 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.1□□□□□ -0.15
MMP28Q9H239 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.1□□□□□ -0.15
MMP28Q9H239 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.1□□□□□ -0.15
MMP28Q9H239 NKAPP1-205ENST00000585790 367 ntBASIC14.1□□□□□ -0.15
MMP28Q9H239 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.1□□□□□ -0.15
MMP28Q9H239 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.1□□□□□ -0.15
MMP28Q9H239 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.09□□□□□ -0.15
MMP28Q9H239 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.09□□□□□ -0.15
MMP28Q9H239 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.09□□□□□ -0.15
MMP28Q9H239 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC14.09□□□□□ -0.15
MMP28Q9H239 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.09□□□□□ -0.15
MMP28Q9H239 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
MMP28Q9H239 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.09□□□□□ -0.15
MMP28Q9H239 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms