Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SLC25A47P1-201ENST00000531577 414 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PRICKLE1-215ENST00000640055 3778 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC022494.1-201ENST00000466044 728 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AL133215.2-201ENST00000609242 977 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 GGT4P-201ENST00000623672 1708 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PCDHA5-203ENST00000614258 4248 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC027307.3-201ENST00000594262 1100 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AL844908.2-201ENST00000609461 460 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC003101.2-201ENST00000612557 442 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC007967.4-201ENST00000614700 386 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AL033527.5-202ENST00000641632 1098 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AL023806.1-201ENST00000603994 1649 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 Six3os1_5.1-201ENST00000611000 271 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RELA-227ENST00000615805 2236 ntTSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 KRT17P8-201ENST00000540749 863 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MIR4492-201ENST00000581627 80 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AP001350.2-201ENST00000625104 1094 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms