Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBE3BQ7Z3V4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 USP32P1-208ENST00000506594 1164 ntBASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 RAB43P1-201ENST00000561790 589 ntBASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 AC106886.1-201ENST00000568660 600 ntBASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
UBE3BQ7Z3V4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 C1QBPP1-201ENST00000400117 770 ntBASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 RPL13AP25-201ENST00000484130 612 ntBASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 MIR5189-201ENST00000577370 114 ntBASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 AC015936.2-201ENST00000593177 259 ntBASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.62■□□□□ 0.73
UBE3BQ7Z3V4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
UBE3BQ7Z3V4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms