Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SDHAP3-202ENST00000515467 728 ntBASIC15.28■□□□□ 0.04
COL28A1Q2UY09 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.28■□□□□ 0.04
COL28A1Q2UY09 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 AL139011.1-202ENST00000642063 584 ntBASIC15.28■□□□□ 0.04
COL28A1Q2UY09 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL28A1Q2UY09 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 SNX33P1-201ENST00000592116 1762 ntBASIC15.27■□□□□ 0.04
COL28A1Q2UY09 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
COL28A1Q2UY09 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 HLA-A-202ENST00000376806 1854 ntBASIC15.27■□□□□ 0.03
COL28A1Q2UY09 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
COL28A1Q2UY09 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL28A1Q2UY09 KRT8P39-201ENST00000396270 1433 ntBASIC15.26■□□□□ 0.03
COL28A1Q2UY09 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms