Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 AC144831.1-201ENST00000573312 2656 ntBASIC16.52■□□□□ 0.24
CDH6P55285 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.52■□□□□ 0.24
CDH6P55285 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.52■□□□□ 0.24
CDH6P55285 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.52■□□□□ 0.24
CDH6P55285 MTND6P24-201ENST00000440466 518 ntBASIC16.52■□□□□ 0.24
CDH6P55285 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.52■□□□□ 0.24
CDH6P55285 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
CDH6P55285 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 MIR4453-201ENST00000584019 89 ntBASIC16.52■□□□□ 0.24
CDH6P55285 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH6P55285 AC027612.4-201ENST00000605371 583 ntBASIC16.52■□□□□ 0.24
CDH6P55285 AC007967.4-201ENST00000614700 386 ntBASIC16.52■□□□□ 0.24
CDH6P55285 AP001059.3-201ENST00000619053 235 ntBASIC16.52■□□□□ 0.24
CDH6P55285 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.52■□□□□ 0.24
CDH6P55285 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH6P55285 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.52■□□□□ 0.23
CDH6P55285 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH6P55285 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 AC090616.6-203ENST00000579186 1945 ntBASIC16.51■□□□□ 0.23
CDH6P55285 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH6P55285 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 AZGP1P1-201ENST00000411909 902 ntBASIC16.51■□□□□ 0.23
CDH6P55285 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CDH6P55285 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.51■□□□□ 0.23
CDH6P55285 RN7SL828P-201ENST00000607615 303 ntBASIC16.51■□□□□ 0.23
CDH6P55285 AC139530.3-201ENST00000620344 690 ntBASIC16.51■□□□□ 0.23
CDH6P55285 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH6P55285 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH6P55285 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH6P55285 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH6P55285 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH6P55285 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.5■□□□□ 0.23
CDH6P55285 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH6P55285 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CDH6P55285 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 SPDYE7P-202ENST00000420373 878 ntBASIC16.5■□□□□ 0.23
CDH6P55285 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH6P55285 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.5■□□□□ 0.23
CDH6P55285 HNRNPUP1-201ENST00000554987 333 ntBASIC16.5■□□□□ 0.23
CDH6P55285 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CDH6P55285 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms