Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 UNC93B7-201ENST00000509439 705 ntBASIC14.03□□□□□ -0.16
SOX2P48431 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.03□□□□□ -0.16
SOX2P48431 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 MIR4321-201ENST00000592276 80 ntBASIC14.03□□□□□ -0.16
SOX2P48431 AL009183.1-201ENST00000603760 355 ntBASIC14.03□□□□□ -0.16
SOX2P48431 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 AL589702.1-201ENST00000641229 1509 ntBASIC14.03□□□□□ -0.16
SOX2P48431 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.03□□□□□ -0.16
SOX2P48431 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.03□□□□□ -0.16
SOX2P48431 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SOX2P48431 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
SOX2P48431 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
SOX2P48431 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.02□□□□□ -0.16
SOX2P48431 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.16
SOX2P48431 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.02□□□□□ -0.16
SOX2P48431 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SOX2P48431 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 AC112693.3-201ENST00000624819 1983 ntBASIC14.02□□□□□ -0.16
SOX2P48431 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.02□□□□□ -0.16
SOX2P48431 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SOX2P48431 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.02□□□□□ -0.16
SOX2P48431 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 MIR1224-201ENST00000408193 85 ntBASIC14.02□□□□□ -0.17
SOX2P48431 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 KRT18P67-201ENST00000432816 1264 ntBASIC14.02□□□□□ -0.17
SOX2P48431 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX2P48431 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms