Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
TM4SF4P48230 UBALD1-205ENST00000590891 2641 ntBASIC17.7■□□□□ 0.42
TM4SF4P48230 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.7■□□□□ 0.42
TM4SF4P48230 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TM4SF4P48230 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TM4SF4P48230 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TM4SF4P48230 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TM4SF4P48230 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 RNF216P1-203ENST00000404404 2427 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 NOC2LP2-201ENST00000407594 1944 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TM4SF4P48230 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 RN7SKP214-201ENST00000364208 315 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TM4SF4P48230 ISCA2P1-201ENST00000425548 448 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 AC078991.1-201ENST00000437297 610 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC17.69■□□□□ 0.42
TM4SF4P48230 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.69■□□□□ 0.42
TM4SF4P48230 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 AC004066.1-201ENST00000502488 802 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.69■□□□□ 0.42
TM4SF4P48230 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 MIR4313-201ENST00000580760 101 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 AL162426.1-201ENST00000624141 743 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 AL603764.1-201ENST00000636452 321 ntBASIC17.69■□□□□ 0.42
TM4SF4P48230 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TM4SF4P48230 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TM4SF4P48230 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM4SF4P48230 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.69■□□□□ 0.42
TM4SF4P48230 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC17.68■□□□□ 0.42
TM4SF4P48230 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 AC009084.3-201ENST00000623356 437 ntBASIC17.68■□□□□ 0.42
TM4SF4P48230 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 AL158070.2-201ENST00000623713 1621 ntBASIC17.68■□□□□ 0.42
TM4SF4P48230 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM4SF4P48230 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.68■□□□□ 0.42
TM4SF4P48230 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.68■□□□□ 0.42
TM4SF4P48230 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM4SF4P48230 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TM4SF4P48230 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.67■□□□□ 0.42
TM4SF4P48230 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM4SF4P48230 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM4SF4P48230 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms