Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
PTPN9P43378 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.44■□□□□ 0.22
PTPN9P43378 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.44■□□□□ 0.22
PTPN9P43378 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.44■□□□□ 0.22
PTPN9P43378 AC044860.1-202ENST00000559481 777 ntBASIC16.44■□□□□ 0.22
PTPN9P43378 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.44■□□□□ 0.22
PTPN9P43378 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.44■□□□□ 0.22
PTPN9P43378 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 AL390754.1-201ENST00000619088 582 ntBASIC16.44■□□□□ 0.22
PTPN9P43378 AL109936.8-201ENST00000641772 604 ntBASIC16.44■□□□□ 0.22
PTPN9P43378 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.44■□□□□ 0.22
PTPN9P43378 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTPN9P43378 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.44■□□□□ 0.22
PTPN9P43378 AC136621.1-201ENST00000624017 2304 ntBASIC16.44■□□□□ 0.22
PTPN9P43378 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTPN9P43378 AC015922.1-201ENST00000421102 1152 ntBASIC16.43■□□□□ 0.22
PTPN9P43378 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PTPN9P43378 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 AC004890.2-204ENST00000481968 304 ntBASIC16.43■□□□□ 0.22
PTPN9P43378 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN9P43378 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.43■□□□□ 0.22
PTPN9P43378 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTPN9P43378 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.43■□□□□ 0.22
PTPN9P43378 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTPN9P43378 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.43■□□□□ 0.22
PTPN9P43378 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms