Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 GNAQP1-201ENST00000444815 1067 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 AC007389.4-201ENST00000454674 793 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 AC144831.1-201ENST00000573312 2656 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FREM3P0C091 AL450472.2-201ENST00000603663 1156 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 REXO1L1P-202ENST00000608646 1974 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 AL662799.1-202ENST00000614205 422 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.38□□□□□ -0.11
FREM3P0C091 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.38□□□□□ -0.11
FREM3P0C091 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.38□□□□□ -0.11
FREM3P0C091 CDC14C-201ENST00000428251 1719 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.38□□□□□ -0.11
FREM3P0C091 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
FREM3P0C091 AL353779.1-201ENST00000434793 351 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.38□□□□□ -0.11
FREM3P0C091 IGHV3-71-201ENST00000523324 359 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 AC055876.2-201ENST00000531834 546 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.38□□□□□ -0.11
FREM3P0C091 AC105233.6-201ENST00000642093 218 ntBASIC14.38□□□□□ -0.11
FREM3P0C091 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FREM3P0C091 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.37□□□□□ -0.11
FREM3P0C091 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FREM3P0C091 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.37□□□□□ -0.11
FREM3P0C091 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.37□□□□□ -0.11
FREM3P0C091 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.36□□□□□ -0.11
FREM3P0C091 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.36□□□□□ -0.11
FREM3P0C091 TP53TG3HP-202ENST00000569755 579 ntBASIC14.36□□□□□ -0.11
FREM3P0C091 AC140912.1-201ENST00000577171 1054 ntBASIC14.36□□□□□ -0.11
FREM3P0C091 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.36□□□□□ -0.11
FREM3P0C091 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.36□□□□□ -0.11
FREM3P0C091 AC012645.4-201ENST00000610691 1061 ntBASIC14.36□□□□□ -0.11
FREM3P0C091 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.36□□□□□ -0.11
FREM3P0C091 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
FREM3P0C091 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FREM3P0C091 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms