Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 AL590560.3-201ENST00000623350 461 ntBASIC16.66■□□□□ 0.26
APOEP02649 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
APOEP02649 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.65■□□□□ 0.26
APOEP02649 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
APOEP02649 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
APOEP02649 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 HMGN1P19-201ENST00000436976 333 ntBASIC16.65■□□□□ 0.26
APOEP02649 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.65■□□□□ 0.26
APOEP02649 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.65■□□□□ 0.26
APOEP02649 RN7SL618P-201ENST00000477850 296 ntBASIC16.65■□□□□ 0.26
APOEP02649 INGX-202ENST00000489074 768 ntBASIC16.65■□□□□ 0.26
APOEP02649 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.65■□□□□ 0.26
APOEP02649 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.65■□□□□ 0.26
APOEP02649 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.65■□□□□ 0.26
APOEP02649 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.65■□□□□ 0.26
APOEP02649 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.65■□□□□ 0.26
APOEP02649 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.65■□□□□ 0.26
APOEP02649 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
APOEP02649 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 AC112504.1-201ENST00000623415 1841 ntBASIC16.65■□□□□ 0.26
APOEP02649 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.65■□□□□ 0.26
APOEP02649 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.65■□□□□ 0.26
APOEP02649 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.65■□□□□ 0.26
APOEP02649 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
APOEP02649 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
APOEP02649 LINC00554-201ENST00000564841 3011 ntBASIC16.64■□□□□ 0.26
APOEP02649 AP005117.1-202ENST00000581724 1908 ntBASIC16.64■□□□□ 0.26
APOEP02649 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.64■□□□□ 0.25
APOEP02649 MIR6069-201ENST00000620069 79 ntBASIC16.64■□□□□ 0.25
APOEP02649 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.64■□□□□ 0.25
APOEP02649 HYMAI-201ENST00000635591 3347 ntBASIC16.64■□□□□ 0.25
APOEP02649 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.64■□□□□ 0.25
APOEP02649 AC087499.5-201ENST00000452760 1342 ntBASIC16.64■□□□□ 0.25
APOEP02649 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
APOEP02649 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms