Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HMGB3O15347 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
HMGB3O15347 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HMGB3O15347 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
HMGB3O15347 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HMGB3O15347 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.83□□□□□ -0.35
HMGB3O15347 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
HMGB3O15347 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.83□□□□□ -0.35
HMGB3O15347 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 RNF152P1-201ENST00000397754 604 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 AC246785.2-201ENST00000432512 513 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 AC096582.2-201ENST00000510860 516 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 LY6E-213ENST00000522528 606 ntTSL 3 BASIC12.83□□□□□ -0.36
HMGB3O15347 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.83□□□□□ -0.36
HMGB3O15347 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 TMEM191A-211ENST00000637163 1067 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 INTS4P1-201ENST00000438455 1935 ntBASIC12.83□□□□□ -0.36
HMGB3O15347 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
HMGB3O15347 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 GPR179-203ENST00000616987 7980 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.83□□□□□ -0.36
HMGB3O15347 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HMGB3O15347 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.83□□□□□ -0.36
HMGB3O15347 ARHGEF10-204ENST00000398564 5480 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 AC131009.4-201ENST00000624048 1740 ntBASIC12.82□□□□□ -0.36
HMGB3O15347 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 GOLGA8CP-201ENST00000446144 5237 ntBASIC12.82□□□□□ -0.36
HMGB3O15347 GOLGA8F-201ENST00000526619 5237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.82□□□□□ -0.36
HMGB3O15347 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.82□□□□□ -0.36
HMGB3O15347 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HMGB3O15347 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HMGB3O15347 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms