Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM35Q9UPQ4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM35Q9UPQ4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM35Q9UPQ4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 GAPDHP40-201ENST00000505218 1006 ntBASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 AL596325.1-201ENST00000563991 1082 ntBASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 BNIP3P41-202ENST00000616656 861 ntBASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 AC105917.1-201ENST00000506637 2539 ntBASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM35Q9UPQ4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC036164.1-201ENST00000570544 333 ntBASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 RPSAP52-203ENST00000622976 1023 ntBASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
TRIM35Q9UPQ4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 AC084364.1-201ENST00000551967 1556 ntBASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM35Q9UPQ4 WFDC1-204ENST00000613603 549 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms