Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 DRD5P1-201ENST00000456605 1438 ntBASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 PDIA3P1-201ENST00000471856 1510 ntBASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 RPL13AP25-201ENST00000484130 612 ntBASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 ENPP7P5-201ENST00000541031 1031 ntBASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 COX11-210ENST00000639671 696 ntBASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 AL118508.1-201ENST00000613502 2345 ntBASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PAAF1Q9BRP4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 KRT223P-202ENST00000449164 1292 ntBASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AC026410.3-201ENST00000514280 936 ntBASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AP001889.1-201ENST00000525414 633 ntBASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AC068587.3-201ENST00000526613 355 ntBASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms