Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 CEND1P1-201ENST00000451006 455 ntBASIC18.15■□□□□ 0.5
USP28Q96RU2 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 AC093520.2-201ENST00000561830 333 ntBASIC18.15■□□□□ 0.5
USP28Q96RU2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
USP28Q96RU2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.15■□□□□ 0.5
USP28Q96RU2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.15■□□□□ 0.5
USP28Q96RU2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
USP28Q96RU2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
USP28Q96RU2 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.14■□□□□ 0.5
USP28Q96RU2 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
USP28Q96RU2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USP28Q96RU2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USP28Q96RU2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
USP28Q96RU2 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USP28Q96RU2 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
USP28Q96RU2 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AL607033.1-201ENST00000623900 1599 ntBASIC18.14■□□□□ 0.49
USP28Q96RU2 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AP000347.1-202ENST00000435868 847 ntBASIC18.14■□□□□ 0.49
USP28Q96RU2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.14■□□□□ 0.49
USP28Q96RU2 AC026979.3-201ENST00000607315 403 ntBASIC18.14■□□□□ 0.49
USP28Q96RU2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.14■□□□□ 0.49
USP28Q96RU2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USP28Q96RU2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
USP28Q96RU2 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 MST1L-201ENST00000442552 2185 ntBASIC18.14■□□□□ 0.49
USP28Q96RU2 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.14■□□□□ 0.49
USP28Q96RU2 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
USP28Q96RU2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
USP28Q96RU2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
USP28Q96RU2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP28Q96RU2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.13■□□□□ 0.49
USP28Q96RU2 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.13■□□□□ 0.49
USP28Q96RU2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.13■□□□□ 0.49
USP28Q96RU2 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.13■□□□□ 0.49
USP28Q96RU2 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP28Q96RU2 CICP24-201ENST00000605464 2705 ntBASIC18.13■□□□□ 0.49
USP28Q96RU2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.13■□□□□ 0.49
USP28Q96RU2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.13■□□□□ 0.49
USP28Q96RU2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.13■□□□□ 0.49
USP28Q96RU2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms