Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 RN7SL589P-201ENST00000481268 310 ntBASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AC061975.2-201ENST00000581722 295 ntBASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AC008267.7-201ENST00000624570 1194 ntBASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 RPL13AP23-201ENST00000480739 586 ntBASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 AC018845.2-201ENST00000568326 409 ntBASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 AC087481.3-201ENST00000602886 1894 ntBASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC54Q8NEL0 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.9□□□□□ -0.19
CCDC54Q8NEL0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
CCDC54Q8NEL0 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 FAM220BP-201ENST00000377689 816 ntBASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms