Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 TSSK5P-201ENST00000423978 907 ntBASIC19.16■□□□□ 0.66
VPS53Q5VIR6 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 AL512361.1-201ENST00000554200 418 ntBASIC19.16■□□□□ 0.66
VPS53Q5VIR6 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 AL390754.1-201ENST00000619088 582 ntBASIC19.16■□□□□ 0.66
VPS53Q5VIR6 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 AL590560.3-201ENST00000623350 461 ntBASIC19.15■□□□□ 0.66
VPS53Q5VIR6 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 AC104640.1-201ENST00000562617 2109 ntBASIC19.15■□□□□ 0.66
VPS53Q5VIR6 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS53Q5VIR6 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.14■□□□□ 0.66
VPS53Q5VIR6 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS53Q5VIR6 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS53Q5VIR6 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.14■□□□□ 0.66
VPS53Q5VIR6 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS53Q5VIR6 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 IGHV3-42-201ENST00000520410 361 ntBASIC19.14■□□□□ 0.65
VPS53Q5VIR6 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AL355385.1-201ENST00000606123 409 ntBASIC19.14■□□□□ 0.65
VPS53Q5VIR6 AL844908.2-201ENST00000609461 460 ntBASIC19.14■□□□□ 0.65
VPS53Q5VIR6 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
VPS53Q5VIR6 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms