Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
FOXA3P55318 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 SLC9A3P2-201ENST00000447821 2021 ntBASIC12□□□□□ -0.49
FOXA3P55318 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 AC113347.1-201ENST00000413321 391 ntBASIC12□□□□□ -0.49
FOXA3P55318 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
FOXA3P55318 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12□□□□□ -0.49
FOXA3P55318 AC245100.5-201ENST00000452108 331 ntBASIC12□□□□□ -0.49
FOXA3P55318 AC092647.4-201ENST00000457211 535 ntBASIC12□□□□□ -0.49
FOXA3P55318 CDV3-207ENST00000508481 661 ntTSL 3 BASIC12□□□□□ -0.49
FOXA3P55318 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12□□□□□ -0.49
FOXA3P55318 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12□□□□□ -0.49
FOXA3P55318 LINC01023-201ENST00000606054 436 ntBASIC12□□□□□ -0.49
FOXA3P55318 BSG-214ENST00000614867 960 ntTSL 3 BASIC12□□□□□ -0.49
FOXA3P55318 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12□□□□□ -0.49
FOXA3P55318 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12□□□□□ -0.49
FOXA3P55318 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12□□□□□ -0.49
FOXA3P55318 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 AC073508.3-201ENST00000619697 1419 ntBASIC12□□□□□ -0.49
FOXA3P55318 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12□□□□□ -0.49
FOXA3P55318 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 AC041040.2-201ENST00000622926 2899 ntBASIC12□□□□□ -0.49
FOXA3P55318 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA3P55318 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12□□□□□ -0.49
FOXA3P55318 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
FOXA3P55318 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 AK4P3-201ENST00000418260 669 ntBASIC11.99□□□□□ -0.49
FOXA3P55318 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 AC006011.2-201ENST00000621313 1158 ntBASIC11.99□□□□□ -0.49
FOXA3P55318 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 KRT8P44-201ENST00000441609 1350 ntBASIC11.99□□□□□ -0.49
FOXA3P55318 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC11.99□□□□□ -0.49
FOXA3P55318 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
FOXA3P55318 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
FOXA3P55318 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
FOXA3P55318 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms