Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SPDYE8P-202ENST00000612377 668 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA1P55317 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 KRT8P37-201ENST00000451609 1420 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA1P55317 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA1P55317 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.38■□□□□ 0.05
FOXA1P55317 HLA-H-201ENST00000383620 1096 ntBASIC15.38■□□□□ 0.05
FOXA1P55317 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.38■□□□□ 0.05
FOXA1P55317 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA1P55317 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA1P55317 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.38■□□□□ 0.05
FOXA1P55317 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
FOXA1P55317 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.38■□□□□ 0.05
FOXA1P55317 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.38■□□□□ 0.05
FOXA1P55317 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA1P55317 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
FOXA1P55317 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.38■□□□□ 0.05
FOXA1P55317 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA1P55317 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
FOXA1P55317 AP3S2-216ENST00000617003 1561 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA1P55317 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
FOXA1P55317 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 YBX2P1-201ENST00000394192 760 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 MCCD1P2-201ENST00000423228 335 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 EEF1DP4-201ENST00000446006 880 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 TIMM8BP1-201ENST00000452384 211 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.37■□□□□ 0.05
FOXA1P55317 AL139010.1-201ENST00000454878 894 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 AC069335.1-201ENST00000489972 472 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 PGAM5P1-201ENST00000518923 814 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 SLC25A39P2-201ENST00000537614 270 ntBASIC15.37■□□□□ 0.05
FOXA1P55317 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
FOXA1P55317 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA1P55317 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms