Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 MIR648-201ENST00000385046 94 ntBASIC18.16■□□□□ 0.5
HMGCS2P54868 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
HMGCS2P54868 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGCS2P54868 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGCS2P54868 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGCS2P54868 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGCS2P54868 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HMGCS2P54868 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 MIR1247-201ENST00000408206 136 ntBASIC18.15■□□□□ 0.5
HMGCS2P54868 FAM197Y7-201ENST00000432892 766 ntBASIC18.15■□□□□ 0.5
HMGCS2P54868 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 FAM86HP-204ENST00000513466 959 ntBASIC18.15■□□□□ 0.5
HMGCS2P54868 AHRR-211ENST00000515206 462 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.15■□□□□ 0.5
HMGCS2P54868 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGCS2P54868 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
HMGCS2P54868 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HMGCS2P54868 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGCS2P54868 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGCS2P54868 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGCS2P54868 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGCS2P54868 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 MIR326-201ENST00000362220 95 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 GAPDHP40-201ENST00000505218 1006 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AC078819.1-201ENST00000547454 765 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AC012085.1-201ENST00000548270 765 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AC023310.1-201ENST00000554836 735 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS2P54868 C2orf69P2-201ENST00000562032 1123 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.14■□□□□ 0.49
HMGCS2P54868 AP005019.2-201ENST00000615104 511 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.14■□□□□ 0.49
HMGCS2P54868 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGCS2P54868 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 AC018695.7-201ENST00000624587 2492 ntBASIC18.14■□□□□ 0.49
HMGCS2P54868 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
HMGCS2P54868 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HMGCS2P54868 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGCS2P54868 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGCS2P54868 AC011477.6-201ENST00000604980 1927 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms